Hi Rebecca

if you upload a subject we will take a look. Can you also send an image of what you think the problem area is? You can also try the hippocampal subfield code as it may improve things

cheers Bruce

On Mon, 17 Sep 2018, Rebecca Ray wrote:

External Email - Use Caution

I am working on MRIs with a single time point. FreeSurfer appears to over estimate the hippocampus in 99% of the cases.  I have attempted to correct the segmentation but after running autorecon2 and autorecon3 it did not make the changes that I made.

How do I correct hippocampal overestimation?

I would love your help.

Best, Rebecca Ray