Dear all,
I ran mkanalysis-sess (mkanalysis-sess -analysis junk -TR 2 -paradigm para01.para -event-related -funcstem fmc -nconditions 3 -runlistfile runlist_odd -fsd bold -fir 10 30 -native) but it did't not generate analysis.cfg. The only file I can see after running this is analysis.info.
When I ran mkanalysis-sess.new, both analysis-info and analysis.cfg are generated as fine. Could any one know how to solve this problem?
ps. I'm running freesurfer5.1.0 on Mac OS X 10.6.8 (the mkanalysis-sess.new is a copy from freesurfer4.5.0).
Thanks! Brown
The 5.X version does not produce a cfg anymore, so everything is ok. You cannot use older versions of mkanalysis-sess with 5.X doug
Po-Jang (Brown) Hsieh wrote:
Dear all,
I ran mkanalysis-sess (mkanalysis-sess -analysis junk -TR 2 -paradigm para01.para -event-related -funcstem fmc -nconditions 3 -runlistfile runlist_odd -fsd bold -fir 10 30 -native) but it did't not generate analysis.cfg. The only file I can see after running this is analysis.info http://analysis.info/.
When I ran mkanalysis-sess.new, both analysis-info and analysis.cfg are generated as fine. Could any one know how to solve this problem?
ps. I'm running freesurfer5.1.0 on Mac OS X 10.6.8 (the mkanalysis-sess.new is a copy from freesurfer4.5.0).
Thanks! Brown
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Dear Doug,
Thanks very much! But without analysis.cfg, I cannot run selxave-sess... Am I missing something here?
Brown
On Wed, Sep 28, 2011 at 11:36 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu
wrote:
The 5.X version does not produce a cfg anymore, so everything is ok. You cannot use older versions of mkanalysis-sess with 5.X doug
Po-Jang (Brown) Hsieh wrote:
Dear all,
I ran mkanalysis-sess (mkanalysis-sess -analysis junk -TR 2 -paradigm para01.para -event-related -funcstem fmc -nconditions 3 -runlistfile runlist_odd -fsd bold -fir 10 30 -native) but it did't not generate analysis.cfg. The only file I can see after running this is analysis.info< http://analysis.info/%3E.
When I ran mkanalysis-sess.new, both analysis-info and analysis.cfg are generated as fine. Could any one know how to solve this problem?
ps. I'm running freesurfer5.1.0 on Mac OS X 10.6.8 (the mkanalysis-sess.new is a copy from freesurfer4.5.0).
Thanks! Brown
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Hi Brown, you should not be mixing versions. There is no selxavg-sess in 5.X. The new version is selxavg3-sess. doug
Po-Jang (Brown) Hsieh wrote:
Dear Doug,
Thanks very much! But without analysis.cfg, I cannot run selxave-sess... Am I missing something here?
Brown
On Wed, Sep 28, 2011 at 11:36 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
The 5.X version does not produce a cfg anymore, so everything is ok. You cannot use older versions of mkanalysis-sess with 5.X doug Po-Jang (Brown) Hsieh wrote: Dear all, I ran mkanalysis-sess (mkanalysis-sess -analysis junk -TR 2 -paradigm para01.para -event-related -funcstem fmc -nconditions 3 -runlistfile runlist_odd -fsd bold -fir 10 30 -native) but it did't not generate analysis.cfg. The only file I can see after running this is analysis.info <http://analysis.info> <http://analysis.info/>. When I ran mkanalysis-sess.new, both analysis-info and analysis.cfg are generated as fine. Could any one know how to solve this problem? ps. I'm running freesurfer5.1.0 on Mac OS X 10.6.8 (the mkanalysis-sess.new is a copy from freesurfer4.5.0). Thanks! Brown ------------------------------------------------------------------------ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.-- Po-Jang (Brown) Hsieh Neuroscience and Behavioral Disorders Program Duke-NUS Graduate Medical School 8 College Road, Singapore 169857 -- Lab website: Brain & Consciousness Lab https://sites.google.com/site/brainconsciousnesslab/
freesurfer@nmr.mgh.harvard.edu
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Douglas N Greve -
Po-Jang (Brown) Hsieh