Hello, While running recon-all on a subject, my machine logged me off for an unrelated reason. It was stopped during -autorecon3, specifically at -surfreg (mris_register) for the right hemi. The left hemi was already done, I believe. What would be the command to start from that step, and continue to the end?
Thanks, Chris
You can do: "recon-all -make all -s <subjid> and it will run all the remaining steps that have not been done or are out of date.
On Fri, 25 Jan 2008, Chris Watson wrote:
Hello, While running recon-all on a subject, my machine logged me off for an unrelated reason. It was stopped during -autorecon3, specifically at -surfreg (mris_register) for the right hemi. The left hemi was already done, I believe. What would be the command to start from that step, and continue to the end?
Thanks, Chris _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
One option is:
recon-all -s (subj) -make all
The other is to follow this table and include just the flags for the uncompleted stages:
http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable
but it sounds like all you need is:
recon-all -s (subj) -autorecon3 -hemi rh
which you could follow with the recon-all -s (subj) -make all to make sure everything was done.
Nick
On Fri, 2008-01-25 at 16:22 -0500, Chris Watson wrote:
Hello, While running recon-all on a subject, my machine logged me off for an unrelated reason. It was stopped during -autorecon3, specifically at -surfreg (mris_register) for the right hemi. The left hemi was already done, I believe. What would be the command to start from that step, and continue to the end?
Thanks, Chris _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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