Hi Jeni, done pass that path to the csd, just the csd base. In your case I think it would be 1GroupAvg-Cor-thickness-Mod-VAS doug

On 4/24/13 8:47 PM, Jeni Chen wrote:

Hello,

I was trying to run mri_glmfit-sim at a lower cwpvalthresh so I specified the --no-sim option to avoid re-running the entire simulation again. I entered my DSC file but in the end I get the error message: "cannot find any csd files". Here is what I entered:

mri_glmfit-sim \ --glmdir GLMFIT/LH_1GroupAvg_ModVAS_nuissanceAGE_DOSS \ --cwpvalthresh .999 \ --no-sim GLMFIT/LH_1GroupAvg_ModVAS_nuissanceAGE_DOSS/csd/mc-z.abs.3.j001-1GroupAvg-Cor-thickness-Mod-VAS.csd

I copied and pasted the csd file from its own folder to the top directory, but it gave the same error. I've attached the error log in case you want to have a look.

Thanks for your help!

Jeni

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