Hi, I am using the 2011 of mris_pmake and I've seen in the list that there are newer versions. I am using both linux and mac. It's giving several errors when computing distances in fsaverage (just in some of the pairs), so I hope that the new version will be able to solve them.
Thank you very much. Gari
here's a linux version
https://gate.nmr.mgh.harvard.edu/safelinks/greve/mris_pmake
On 11/28/2016 05:22 PM, Garikoitz Lerma-Usabiaga wrote:
Hi, I am using the 2011 of mris_pmake and I've seen in the list that there are newer versions. I am using both linux and mac. It's giving several errors when computing distances in fsaverage (just in some of the pairs), so I hope that the new version will be able to solve them.
Thank you very much. Gari
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thanks Doug! I am using the following command, which is working in the old version: mris_pmake --subject fsaverage --hemi lh --surface0 smoothwm --curv0 sulc --curv1 sulc --mpmOverlay euclidean --mpmProg pathFind --mpmArgs startVertex:46986,endVertex:162197
In the new version it gives errors saying that the options are not recognized (surface0, surface1, curv0...), although they are in the instructions. Is there something else I should be aware of?
thanks again, Gari
On Mon, Nov 28, 2016 at 11:57 PM Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
here's a linux version
https://gate.nmr.mgh.harvard.edu/safelinks/greve/mris_pmake
On 11/28/2016 05:22 PM, Garikoitz Lerma-Usabiaga wrote:
Hi, I am using the 2011 of mris_pmake and I've seen in the list that there are newer versions. I am using both linux and mac. It's giving several errors when computing distances in fsaverage (just in some of the pairs), so I hope that the new version will be able to solve them.
Thank you very much. Gari
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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No idea, I did not program it:). I've put the help file here. Hopefully that is up-to-date
https://gate.nmr.mgh.harvard.edu/safelinks/greve/mris_pmake.help.xml
On 11/28/2016 06:50 PM, Garikoitz Lerma-Usabiaga wrote:
Thanks Doug! I am using the following command, which is working in the old version: mris_pmake --subject fsaverage --hemi lh --surface0 smoothwm --curv0 sulc --curv1 sulc --mpmOverlay euclidean --mpmProg pathFind --mpmArgs startVertex:46986,endVertex:162197
In the new version it gives errors saying that the options are not recognized (surface0, surface1, curv0...), although they are in the instructions. Is there something else I should be aware of?
thanks again, Gari
On Mon, Nov 28, 2016 at 11:57 PM Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
here's a linux version https://gate.nmr.mgh.harvard.edu/safelinks/greve/mris_pmake On 11/28/2016 05:22 PM, Garikoitz Lerma-Usabiaga wrote: > Hi, > I am using the 2011 of mris_pmake and I've seen in the list that there > are newer versions. > I am using both linux and mac. > It's giving several errors when computing distances in fsaverage (just > in some of the pairs), so I hope that the new version will be able to > solve them. > > Thank you very much. > Gari > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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Garikoitz Lerma-Usabiaga