sure, we segment putamen, pallidum and caudate as part of the aseg.mgz (and nucleus accumbens, although that is less well-defined) On Thu, 11 Feb 2016, Syeda Wajiha Maryam wrote:

Fear Freesurfer Experts,

I have a feeling this question has been asked already but I'm still confused about it. Is there a way to extract the basal ganglia structure using freesurfer?

Thanks in advance for your help!

Regards, Maryam