hi Zeke, were you able to find a solution to my problem with running tkmedit on a remote machine? thanks Jon
----- Original Message ----- From: "Z K" zkaufman@nmr.mgh.harvard.edu To: "Jon Wieser" wieser@uwm.edu Sent: Thursday, May 30, 2013 1:42:41 PM Subject: Re: [Freesurfer] tkmedit on ssh remote machine error
Hmm that is a very strange error you are encountering. Im trying to duplicate the issue on my end. I only have one Mac 10.6 and one Mac 10.7 machine but Ill let you know what I find and hopefully I can come up with a solution.
-Zeke
On 05/30/2013 02:37 PM, Jon Wieser wrote:
both machines have Mac OS X 10.6.8
the tkmedit works fine when not logged in remotely there is no error and the brain image is there Jon
----- Original Message ----- From: "Z K" zkaufman@nmr.mgh.harvard.edu To: "Jon Wieser" wieser@uwm.edu Cc: "freesurfer" freesurfer@nmr.mgh.harvard.edu Sent: Thursday, May 30, 2013 12:16:55 PM Subject: Re: [Freesurfer] tkmedit on ssh remote machine error
Jon,
I have not seen or heard of this error before... are both machines Mac OSX 10.6.8? Also, will the same command will produce a brain image when not logged in remotely?
-Zeke
On 05/30/2013 12:43 PM, Jon Wieser wrote:
hi freesurfer folks
I'm ssh'ing to from one MAc to another X11 is on both machines MAC OS X 10.6.8
When I start TKmedit with: (freesurfer files are in the freesurfer directory)
tkmedit freesurfer brainmask.mgz -aux T1.mgz
I get the errors: Thu May 30 11:34:50 cerebrum.uwm.edu tkmedit.bin[78500] <Error>: kCGErrorIllegalArgument: _CGSFindSharedWindow: WID 349 Thu May 30 11:34:50 cerebrum.uwm.edu tkmedit.bin[78500] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged. Thu May 30 11:34:50 cerebrum.uwm.edu tkmedit.bin[78500] <Error>: kCGErrorIllegalArgument: CGSSetWindowSendExposed: Invalid window 0x15d Thu May 30 11:34:50 cerebrum.uwm.edu tkmedit.bin[78500] <Error>: unknown error code: invalid drawable error: xp_attach_gl_context returned: 2
tkmedit GUI opens and the image window opens, but the image window is blank (white) , (no image of the brain)
i have set X11forwarding to yes in the /etc/sshd_config file so xeyes works ok remotely Jon
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The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Jon,
I myself have not been able successful running tkmedit over an ssh session using Mac as both client and server... But I know it can be done. There's a lot of factors involved, many to do with Xwindows/Xforwarding/XQuartz/ssh and have nothing to do with freesurfer. So its been a bit of a challenge to debug. Ill follow up as soon as I reasonable can.
-Zeke
On 06/11/2013 10:28 AM, Jon Wieser wrote:
hi Zeke, were you able to find a solution to my problem with running tkmedit on a remote machine? thanks Jon
----- Original Message ----- From: "Z K" zkaufman@nmr.mgh.harvard.edu To: "Jon Wieser" wieser@uwm.edu Sent: Thursday, May 30, 2013 1:42:41 PM Subject: Re: [Freesurfer] tkmedit on ssh remote machine error
Hmm that is a very strange error you are encountering. Im trying to duplicate the issue on my end. I only have one Mac 10.6 and one Mac 10.7 machine but Ill let you know what I find and hopefully I can come up with a solution.
-Zeke
On 05/30/2013 02:37 PM, Jon Wieser wrote:
both machines have Mac OS X 10.6.8
the tkmedit works fine when not logged in remotely there is no error and the brain image is there Jon
----- Original Message ----- From: "Z K" zkaufman@nmr.mgh.harvard.edu To: "Jon Wieser" wieser@uwm.edu Cc: "freesurfer" freesurfer@nmr.mgh.harvard.edu Sent: Thursday, May 30, 2013 12:16:55 PM Subject: Re: [Freesurfer] tkmedit on ssh remote machine error
Jon,
I have not seen or heard of this error before... are both machines Mac OSX 10.6.8? Also, will the same command will produce a brain image when not logged in remotely?
-Zeke
On 05/30/2013 12:43 PM, Jon Wieser wrote:
hi freesurfer folks
I'm ssh'ing to from one MAc to another X11 is on both machines MAC OS X 10.6.8
When I start TKmedit with: (freesurfer files are in the freesurfer directory)
tkmedit freesurfer brainmask.mgz -aux T1.mgz
I get the errors: Thu May 30 11:34:50 cerebrum.uwm.edu tkmedit.bin[78500] <Error>: kCGErrorIllegalArgument: _CGSFindSharedWindow: WID 349 Thu May 30 11:34:50 cerebrum.uwm.edu tkmedit.bin[78500] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged. Thu May 30 11:34:50 cerebrum.uwm.edu tkmedit.bin[78500] <Error>: kCGErrorIllegalArgument: CGSSetWindowSendExposed: Invalid window 0x15d Thu May 30 11:34:50 cerebrum.uwm.edu tkmedit.bin[78500] <Error>: unknown error code: invalid drawable error: xp_attach_gl_context returned: 2
tkmedit GUI opens and the image window opens, but the image window is blank (white) , (no image of the brain)
i have set X11forwarding to yes in the /etc/sshd_config file so xeyes works ok remotely Jon
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Jon Wieser -
Z K