Hi James

I think the -lh/-rh flags are for processing single (ex vivo) hemis, not for only processing one hemi in a whole-brain image. If you want to erase the hemi with the tumor it will probably work

cheers Bruce On Wed, 9 Oct 2019, 王子谦 wrote:

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Dear developers, right now I'm trying to measure the cortical thickness of the right hemisphere in the left side tumor patients. Here I met some problem. Since the complex intensities in the tumor, it makes the 'recon-all -all' command to be very time consuming(3 days per subject). Do you have any experience dealing with the tumor patients?  I also tried the '-lh' flag, but there is only one file named 'rh.curv.stats' in stats folder.  The command is:recon-all -s 130 -i 130.nii -qcache -3T -hemi rh -all

Do you have any idea about where the problem is?

Best wishes, James