Hi Stefano,

A) From FreeSurfer 5.2 onwards, the Yeo parcellation files can be found inside $FREESURFER_HOME/subjects/fsaverage/label/, so you can simply use those files there instead of downloading from the wiki.

B) You can use mri_surf2surf to transform the annot files from the fsaverage "subject" to the individual subjects' surface. There is an example of how to do it if you run "mri_surf2surf --help"

C) Once you have created the subject's specific annot file from part B, I believe you must first run mris_anatomical_stats, and then run aparcstats2table. However, I am not sure about this, so someone on the list should correct me if I am wrong!

Regards, Thomas

On Fri, Feb 7, 2014 at 3:58 PM, stdp82@virgilio.it wrote:

Hi list,

I have download the files of Yeo parcellation from ftp://surfer.nmr.mgh.harvard.edu/pub/data/Yeo_JNeurophysiol11_MNI152.zip.

I have two questions, please.

A- Which is the directory where I should put these files? B-I have already run by recon-all -all all my subjects. How can I added to them Yeo parcellation? C-I'd like also calculate the cortical thickness for each Yeo's ROI. Is possible with aparcstats2table?

Thanks.

Regards,

Stefano

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