External Email - Use Caution
Hello,
After running mri_vol2label I created a custom label named test.label. When I try to load the label onto lh.pial, I receive the following error: "Could not load label from <path>". The file is saved within the path folder itself. Within the terminal I receive the warning "label has not been mapped to surface". I was wondering what might be causing this issue? Attached is the label file.
mri_vol2label --c mri/aparc+aseg.mgz --id 1016 --l label/lh.parahippocampal. label
Thank you, Catherine
If you want the parahippo label on the surface, then convert the lh.aparc.annot to labels with mri_annotation2label. Run with --help to get examples
On 11/19/2020 11:57 AM, Catherine Tallman wrote:
External Email - Use Caution
Hello,
After running mri_vol2label I created a custom label named test.label. When I try to load the label onto lh.pial, I receive the following error: "Could not load label from <path>". The file is saved within the path folder itself. Within the terminal I receive the warning "label has not been mapped to surface". I was wondering what might be causing this issue? Attached is the label file.
mri_vol2label --c mri/aparc+aseg.mgz --id 1016 --l label/lh.parahippocampal.label
Thank you, Catherine -- ------------------------------------------------ Catherine Tallman, M.A. Graduate Student CNS Laboratory of Memory and Brain University of California, San Diego
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Hello,
I was wondering if there were any updates on this question?
Thank you, Catherine
---------- Forwarded message --------- From: Catherine Tallman ctallman@ucsd.edu Date: Thu, Nov 19, 2020 at 8:57 AM Subject: Issue with custom label To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu
Hello,
After running mri_vol2label I created a custom label named test.label. When I try to load the label onto lh.pial, I receive the following error: "Could not load label from <path>". The file is saved within the path folder itself. Within the terminal I receive the warning "label has not been mapped to surface". I was wondering what might be causing this issue? Attached is the label file.
mri_vol2label --c mri/aparc+aseg.mgz --id 1016 --l label/lh.test.label
Thank you, Catherine
Try --i mri/aparc+aseg.mgz instead of --c
On 11/30/2020 7:28 PM, Catherine Tallman wrote:
External Email - Use Caution
Hello,
I was wondering if there were any updates on this question?
Thank you, Catherine
---------- Forwarded message --------- From: Catherine Tallman <ctallman@ucsd.edumailto:ctallman@ucsd.edu> Date: Thu, Nov 19, 2020 at 8:57 AM Subject: Issue with custom label To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu>
Hello,
After running mri_vol2label I created a custom label named test.label. When I try to load the label onto lh.pial, I receive the following error: "Could not load label from <path>". The file is saved within the path folder itself. Within the terminal I receive the warning "label has not been mapped to surface". I was wondering what might be causing this issue? Attached is the label file.
mri_vol2label --c mri/aparc+aseg.mgz --id 1016 --l label/lh.test.label
Thank you, Catherine -- ------------------------------------------------ Catherine Tallman, M.A. Graduate Student CNS Laboratory of Memory and Brain University of California, San Diego
-- ------------------------------------------------ Catherine Tallman, M.A. Graduate Student CNS Laboratory of Memory and Brain University of California, San Diego
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Catherine Tallman -
Greve, Douglas N.,Ph.D.