Hi Antoine,

I would guess this is a memory issue. You could try allocating more and/or look at the exit code. I believe 137 would indicate that Python ran out of memory.

Malte

________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Antoine Royer Antoine.Royer@usherbrooke.ca Sent: Thursday, April 11, 2024 16:21 To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] mri_synthmorph

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Hi,

I am developping a Nextflow DSL2 module through nf-core for registration using mri_synthmorph, through the dockerised version: MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://hub.docker.com/r/freesurfer/synthmorphhttps://secure-web.cisco.com/1F0tLsgl5mSp6FHNJceZtb0_zJW26GZiSS0O_W7cYXg5eO4k5Y4IO_yTbNoM7nfomidDPGAXjnzDCPm1UkTtOSiMK4V-oxH_U0ANMcn0FaJWjIAMW5hs8czh3EagsX2LcanlrE3nXRXmRcgiSes0j0Cfn1CkR7VUMV8nkYvpgECTfe6Nmm0VmloYUv0dk-GakSQqBqy0mJcLZ2swdnvwcb73E8jMH85qEMn4ERtLq_NApLHeeeMXvaDLoQC3b-rj2RfwLGFbrRHPt9SF_aBgFjut9dHd7vvdkVZhJEMQ6ttbyU_40e3K2YlcWllOCb1fM/https%3A%2F%2Fhub.docker.com%2Fr%2Ffreesurfer%2Fsynthmorph

Here is a couple of screenshots showing the ressource consumption of my computer and through Docker.

I don't have any issue running it locally, but there seems to be an issue through my container which is set at 16 core at 24 GB. Does anyone have any insight on how to troubleshoot this?

Thank you!