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Be aware that there are NO alternatives to visual inspection
------------------------------ *From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of yunus soleymani < soleymani.yunus@yahoo.com> *Sent:* Saturday, October 14, 2023 3:18 AM *To:* freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] data quality check before analysis [EXTERNAL]
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Hi there,
My name is Yunus and I'm currently working on my Ph.D. thesis, which involves analyzing the HCP database volumetrically using Freesurfer. However, before I begin with the software, I was wondering if there is a tool in Freesurfer that can perform a quality check on the data to identify any possible artifacts or noise that might affect the analysis.
Could you please let me know if such a tool exists in Freesurfer? Your help would be much appreciated.
Thank you and Best Regards, Yunus.
-------------------------------------------------------------------------------- *Yunus Soleymani*
*Ph.D. Candidate of Neuroimaging * *Tehran University of Medical Sciences*
*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be soleymani.yunus@yahoo.com https://secure-web.cisco.com/1b4Zahk7jmAyrHinzKCHjz95tCDKjVy_xhMBgqvGUqfyvQPM361rhNiKenH_4O7_kj3V6l1ug8BlzLlUV65ez1y9SFHo--4EVOw-ZwrgZB6jn9Lf1i8vbOeT2jysmynSpZ6OerXI98z2TXwyPZH69VV9BUIZE6nA60GHipUooRdpMMX0qg5Schlh9lukVumuiIpA2sgYu8KEAr7QNojABv3tuSdB8CYuVzupougmaEissWLm2sCTMHGzfO9ix34jN-7zLSlPIYmrw4k4AQ3wmxm63YQb31ws0zpdgfb1z31OszMnaHPEZhgRltCyvltosRjYmZlu9qaH36HTOgqC5vj4yH9YxsReHOG87MoeXefk/https%3A%2F%2Furldefense.com%2Fv3%2F__http%3A%2F%2Fsecure-web.cisco.com%2F1ZQGvToQhTy-7a1VY-6NFgGSbFLn2HY7nSawP6UX6nSoyhBvB8A57SHrn0AX74k6iTdEB_gHiXC1Hw79mJx-2V0qd7A5IsUZUjmi1CC3VTIuwhfy9gQ3PeY00c9z8sk6kFqGa8QSVAcEvqz5cTa0FsoAPviJ1jxBPpwRYFN0E2bYVEykIgqg9TMnHYIIx2PVkYhINSjV2Y4nusrHpL0yUcXw2J2w6q83JRFO439WUSL7TG0gutSBySwtHBPUv7wCrhjpOgpBOpWTreSZ4AlMOyjCAQZrpsE2R_NuFZwhorx3PSgLX6snKtUIe2UZKuSXhTsg43dECPtzoYpPC1gbKDA%2Fhttp*3A*2F*2Fwww.yahoo.com__;JSUl!!NZvER7FxgEiBAiR_!vXild0BITbWt0tIHT8BkodzE_Eh6X-_IzNlTYVoBQEN2GFMMjCzUOtyZFMJsFui7oFuLBDJHRTJXfGi-ijALgdV0RUQ6qejJBo6s9JVr9ec$* +98 914 526 9298 --------------------------------------------------------------------------------
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Thank you for your response. My next question is regarding the analysis process. I am curious to know if there is any difference between analyzing one specific subject and analyzing multiple subjects in parallel. For instance, if I am working on 1000 subjects, would it make a difference in the volumetric results if I analyze all of them at once in parallel or break them down into smaller groups to analyze? I would greatly appreciate your help with this.
Thank you and Best Regards,Yunus.
--------------------------------------------------------------------------------Yunus Soleymani Ph.D. Candidate of Neuroimaging Tehran University of Medical Sciences soleymani.yunus@yahoo.com+98 914 526 9298--------------------------------------------------------------------------------
On Saturday, October 14, 2023 at 03:29:11 PM GMT+3:30, John Anderson jb19790001@gmail.com wrote:
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From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of yunus soleymani soleymani.yunus@yahoo.com Sent: Saturday, October 14, 2023 3:18 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] data quality check before analysis [EXTERNAL] | * External Email - Caution * |
External Email - Use Caution
Hi there, My name is Yunus and I'm currently working on my Ph.D. thesis, which involves analyzing the HCP database volumetrically using Freesurfer. However, before I begin with the software, I was wondering if there is a tool in Freesurfer that can perform a quality check on the data to identify any possible artifacts or noise that might affect the analysis. Could you please let me know if such a tool exists in Freesurfer? Your help would be much appreciated. Thank you and Best Regards,Yunus.
--------------------------------------------------------------------------------Yunus Soleymani Ph.D. Candidate of Neuroimaging Tehran University of Medical Sciences MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be soleymani.yunus@yahoo.com+98 914 526 9298-------------------------------------------------------------------------------- _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1yb0dQ9javif3ilWl3aOCB7iUAJK6Bn2AmE53boP_e7D37X...
freesurfer@nmr.mgh.harvard.edu
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John Anderson -
yunus soleymani