Hi,

While we are on the format conversion topic. I am trying to convert an FreeSurfer fomat structural into analyze format .img/.hdr file. This is following the freesurfer skullstrip and tkmedit steps.

Thanks, Avram

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Avram Holmes Department of Psychology Harvard University 1210 William James Hall Phone:(617) 495-0790 33 Kirkland Street Fax:(617) 495-3728 Cambridge, MA 02138, USA Email: holmes@fas.harvard.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Quoting Doug Greve greve@nmr.mgh.harvard.edu:

tkregister2 --mov yourspm.img --s yoursubject --reg register.dat --regheader

yourspm.img should have a matlab4 yourspm.mat file

There also a cmd-line program called spmregister, which you can run something like:

spmregister --mov yourspm.img --s yoursubject --reg register.dat

doug

jswonder wrote:

...

Hello all,

I am looking for a way to convert an SPM .mat to a FreeSurfer registration matrix (register.dat); basically, something like the old spmmat2register command, but not obsolete...any suggestions?

Thanks! _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

mri_convert brain.mgz brain.img

Avram Holmes wrote:

Hi,

While we are on the format conversion topic. I am trying to convert an FreeSurfer fomat structural into analyze format .img/.hdr file. This is following the freesurfer skullstrip and tkmedit steps.

Thanks, Avram

Avram Holmes
Department of Psychology
Harvard University
1210 William James Hall      Phone:(617) 495-0790
33 Kirkland Street           Fax:(617) 495-3728
Cambridge, MA 02138, USA     Email: holmes@fas.harvard.edu

Quoting Doug Greve greve@nmr.mgh.harvard.edu:

...

tkregister2 --mov yourspm.img --s yoursubject --reg register.dat --regheader

yourspm.img should have a matlab4 yourspm.mat file

There also a cmd-line program called spmregister, which you can run something like:

spmregister --mov yourspm.img --s yoursubject --reg register.dat

doug

jswonder wrote:

...

Hello all,

I am looking for a way to convert an SPM .mat to a FreeSurfer registration matrix (register.dat); basically, something like the old spmmat2register command, but not obsolete...any suggestions?

Thanks! _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer