Hi everyone, I am attaching a tiff file showing the tkmedit view of the average T1 that freesurfer created during make_average_subject. I am a bit concerned
about the cropping that is evident at the posterior aspect of the brain. The
individual T1's are complete and ok, so i am guessing that something went wrong during the transform of the individual brain during the process. Can anyone help me find out the problem ? The average surfaces also look all right. thanks, sid.
that is strange. Do the surfaces look ok? How many subjects are you averaging? Does this happen if you only average one or a few? On Thu, 22 Jan 2009, Siddharth Srivastava wrote:
Hi everyone, I am attaching a tiff file showing the tkmedit view of the average T1 that freesurfer created during make_average_subject. I am a bit concerned
about the cropping that is evident at the posterior aspect of the brain. The
individual T1's are complete and ok, so i am guessing that something went wrong during the transform of the individual brain during the process. Can anyone help me find out the problem ? The average surfaces also look all right. thanks, sid.
The surfaces look all right. It happens only to T1. It cant be a display problem, can it?? sid.
On Fri, Jan 23, 2009 at 5:58 AM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
that is strange. Do the surfaces look ok? How many subjects are you averaging? Does this happen if you only average one or a few?
On Thu, 22 Jan 2009, Siddharth Srivastava wrote:
Hi everyone,
I am attaching a tiff file showing the tkmedit view ofthe average T1 that freesurfer created during make_average_subject. I am a bit concerned
about the cropping that is evident at the posterior aspect of the brain. The
individual T1's are complete and ok, so i am guessing that something went wrong during the transform of the individual brain during the process. Can anyone help me find out the problem ? The average surfaces also look all right. thanks, sid.
I don't think so. How many subjects? Have you tried fewer? On Fri, 23 Jan 2009, Siddharth Srivastava wrote:
The surfaces look all right. It happens only to T1. It cant be a display problem, can it?? sid.
On Fri, Jan 23, 2009 at 5:58 AM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
that is strange. Do the surfaces look ok? How many subjects are you averaging? Does this happen if you only average one or a few?
On Thu, 22 Jan 2009, Siddharth Srivastava wrote:
Hi everyone,
I am attaching a tiff file showing the tkmedit view ofthe average T1 that freesurfer created during make_average_subject. I am a bit concerned
about the cropping that is evident at the posterior aspect of the brain. The
individual T1's are complete and ok, so i am guessing that something went wrong during the transform of the individual brain during the process. Can anyone help me find out the problem ? The average surfaces also look all right. thanks, sid.
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Siddharth Srivastava