Hello,
I am trying to create and view an omnibus contrast for one subject. When I type the appropriate command:
paint-sess -analysis SNgamma -contrast omnibus -space sph -spacedir sphsm20 -d . -s sub28a -subject sub28_recon
I get the following error: ----------------------------------------------------------------- paint-sess logfile is /autofs/space/perun_004/users/sheeva/fMRIanal/log/paint-sess.log ----------------------------------------------------------------- setenv SUBJECTS_DIR /space/perun/3/users/cylix/Subjects INFO: painting onto white grep: /autofs/space/perun_004/users/sheeva/fMRIanal/sub28a/session.info: No such file or directory SpaceDir is sphsm20 SpaceSubDir is sphsm20 INFO: setting srcsubject to ico ------ lh hemisphere ------ Thu Mar 8 13:12:00 EST 2007 SpaceDir is sphsm20 INFO: Painting onto sub28_recon ERROR: cannot find any files with /autofs/space/perun_004/users/sheeva/fMRIanal/sub28a/bold_SN/SNgamma/sphsm20/omnibus/sig-lh
It seems that stxgrinder-sess created fsig, f, iminsig, and minsig files, but did not create t or sig files. This only occurred for the omnibus -- it didn't happen with the other contrasts. I don't know if I should be doing something differently for the omnibus as compared to the other contrasts -- any insight would be greatly appreciated.
Thank you! Sheeva Azma
FREESURFER_HOME: /usr/local/freesurfer/stable Build stamp: freesurfer-Linux-centos4-stable-v3.0.5-20070308 RedHat release: CentOS release 4.4 (Final) Kernel info: Linux 2.6.9-42.0.3.ELsmp i686 NMR Center info (/space/freesurfer exists): machine: perun SUBJECTS_DIR: /space/perun/3/users/cylix/Subjects PWD: /autofs/space/perun_004/users/sheeva/fMRIanal
Hi Sheeva,
With stxgrinder-sess, t-test is not saved when contrast is "omnibus", probably because omnibus contrast is "all tasks vs. fixation" and t-test would be irrelevant.
Reza
Hello,
I am trying to create and view an omnibus contrast for one subject. When I type the appropriate command:
paint-sess -analysis SNgamma -contrast omnibus -space sph -spacedir sphsm20 -d . -s sub28a -subject sub28_recon
I get the following error:
paint-sess logfile is /autofs/space/perun_004/users/sheeva/fMRIanal/log/paint-sess.log
setenv SUBJECTS_DIR /space/perun/3/users/cylix/Subjects INFO: painting onto white grep: /autofs/space/perun_004/users/sheeva/fMRIanal/sub28a/session.info: No such file or directory SpaceDir is sphsm20 SpaceSubDir is sphsm20 INFO: setting srcsubject to ico ------ lh hemisphere ------ Thu Mar 8 13:12:00 EST 2007 SpaceDir is sphsm20 INFO: Painting onto sub28_recon ERROR: cannot find any files with /autofs/space/perun_004/users/sheeva/fMRIanal/sub28a/bold_SN/SNgamma/sphsm20/omnibus/sig-lh
It seems that stxgrinder-sess created fsig, f, iminsig, and minsig files, but did not create t or sig files. This only occurred for the omnibus -- it didn't happen with the other contrasts. I don't know if I should be doing something differently for the omnibus as compared to the other contrasts -- any insight would be greatly appreciated.
Thank you! Sheeva Azma
FREESURFER_HOME: /usr/local/freesurfer/stable Build stamp: freesurfer-Linux-centos4-stable-v3.0.5-20070308 RedHat release: CentOS release 4.4 (Final) Kernel info: Linux 2.6.9-42.0.3.ELsmp i686 NMR Center info (/space/freesurfer exists): machine: perun SUBJECTS_DIR: /space/perun/3/users/cylix/Subjects PWD: /autofs/space/perun_004/users/sheeva/fMRIanal
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
******************************** Reza Rajimehr, MD
NMR Athinoula A. Martinos Center Department of Radiology Massachusetts General Hospital (MGH) Building 149, 13th St. Charlestown, MA 02129
Email: reza@nmr.mgh.harvard.edu ********************************
freesurfer@nmr.mgh.harvard.edu
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Reza Rajimehr -
Sheeva Azma