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Hi Doug,
I sent you the images attached to the email and also through FTP File Exchange.
Thank you for your attention. Best regards,
Marina
Douglas N. Greve I'm still not understanding what is happening. Can you send three pics of the inflated surface of same location, one with cortex.label, one with aparc.annot, and one with aparc.a2009s.annot? Also, please remember to include previous emails so that I have context, thanks
On 9/3/2020 9:55 AM, Marina Fernández wrote:
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Sorry for the misunderstanding Doug . I have checked the lh.aparc.annot on the surface and there is no G_subcallosal label in these subjects. In that region are the G_and_S_cingul-Ant label / S_pericallosal labels. On the other hand, the surface appears normal.
What do you recommend us to do?
Thank you in advance. Marina.
Douglas N. Greve https://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=from:%22Douglas+N.+Greve%22 Wed, 02 Sep 2020 10:31:13 -0700 https://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=date:20200902 Sorry, I meant to look on the surface and see if the label is there and what the lh.aparc.annot looks like there
On 9/2/2020 11:05 AM, Marina Fernández wrote:
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Hi Doug,
When I load the volume aparc.a2009s+aseg.mgz in a subject without the G_subcallosal region in the lh.aparc.a2009s.stats file, I can see that in the other hemisphere (right in this case) there is G_subcallosal while in the left hemisphere this contralateral region is filled by the lh_S_suborbital region. So, it's covered by another label.
What should we do?
Best wishes, Marina
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Douglas N. Greve < https://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=f...
Wed, 02 Sep 2020 07:23:58 -0700 <
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Does the cortex label cover it? What does the aparc look like in that area?
On 9/2/2020 6:09 AM, Marina Fernández wrote:
External Email - Use Caution Dear experts,
I have noticed that some subjects don't show the G_subcallosal region in the *h.aparc.a2009s.stats file. Do you know why is this happening? Is there a way to fix it?
Thank you in advance. Best regards, Marina _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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OK, I see what you mean now, I'm just not sure how to fix it. What version of FS are you using?
On 9/3/2020 12:07 PM, Marina Fernández wrote:
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Hi Doug,
I sent you the images attached to the email and also through FTP File Exchange.
Thank you for your attention. Best regards,
Marina
____________________________________________ Douglas N. Greve I'm still not understanding what is happening. Can you send three pics of the inflated surface of same location, one with cortex.label, one with aparc.annot, and one with aparc.a2009s.annot? Also, please remember to include previous emails so that I have context, thanks On 9/3/2020 9:55 AM, Marina Fernández wrote: External Email - Use Caution Sorry for the misunderstanding Doug . I have checked the lh.aparc.annot on the surface and there is no G_subcallosal label in these subjects. In that region are the G_and_S_cingul-Ant label / S_pericallosal labels. On the other hand, the surface appears normal. What do you recommend us to do? Thank you in advance. Marina. Douglas N. Greve <https://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=from:%22Douglas+N.+Greve%22> Wed, 02 Sep 2020 10:31:13 -0700 <https://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=date:20200902> Sorry, I meant to look on the surface and see if the label is there and what the lh.aparc.annot looks like there On 9/2/2020 11:05 AM, Marina Fernández wrote: External Email - Use Caution Hi Doug, When I load the volume aparc.a2009s+aseg.mgz in a subject without the G_subcallosal region in the lh.aparc.a2009s.stats file, I can see that in the other hemisphere (right in this case) there is G_subcallosal while in the left hemisphere this contralateral region is filled by the lh_S_suborbital region. So, it's covered by another label. What should we do? Best wishes, Marina ---------------------------------------------------------------------------------------------------------------------------- Douglas N. Greve <https://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=from:%22Douglas+N.+Greve%22> Wed, 02 Sep 2020 07:23:58 -0700 <https://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=date:20200902>Does the cortex label cover it? What does the aparc look like in that area? On 9/2/2020 6:09 AM, Marina Fernández wrote: External Email - Use Caution Dear experts, I have noticed that some subjects don't show the G_subcallosal region in the *h.aparc.a2009s.stats file. Do you know why is this happening? Is there a way to fix it? Thank you in advance. Best regards, Marina _______________________________________________ Freesurfer mailing listFreesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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