Hi Bente,

so you did process subjectname_pre_nii and subjectname_post_dicom independently with freesurfer (recon-all)? You should have those directories in you subjects dir.

I have never seen the error you are getting. Can you send me the full recon-all.log to see at what step it is failing?

In the meantime you can look at the orig.mgz in the subjectname_template/mri dir (and other images, nu.mgz, brainmaks.mgz, norm.mgz) if they look OK.

Thanks, Martin

On Thu, 2011-11-17 at 14:55 -0500, bbruijn@bidmc.harvard.edu wrote:

Dear FS-experts,

I'm doing a longitudinal comparison of cortical thickness and am therefore following the steps of the longitudinal stream on the freesurfer wiki.

I've created templates for all of my subjects but one, for which I received an error message trying to create the template (or base).

This is the command:

recon-all -base subjectname_template -tp subjectname_pre_nii -tp subjectname_post_dicom -all

This is the error message I receive:

recon-all -s subjectname_template exited with ERRORS at Wed Nov 16 18:19:57 EST 2011

When I look in the logfile, I read this line (repeated):

mhtVoxelList_Add(139, 172, 245, 85437): complete list too big! etc.

Is this something I can fix? Are my pre and post files not compatible? I hope you can help me, thanks in advance!

Bente _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer