Re: [Freesurfer] ERROR: You are trying to re-run an existing subject - Freesurfer

14 Sep 2012

      what did you rename it to and what is your command line after you rename it?
On 09/14/2012 04:48 PM, Carolina Valencia wrote:
...
As I said in the first email I tried the suggestions in the message, 
rename the files, folders, eliminate the folders, starts from scratch 
etc and again with your answer, I rename the folder of dicom, and 
rename the MPRAGE files and anything works, still the same message.
Thank you,
2012/9/14 Douglas N Greve <greve@nmr.mgh.harvard.edu 
mailto:greve@nmr.mgh.harvard.edu>
The error output below tells you what to do. If the subject folder
(HPTU_vol11_2012) already exists. Since it has your dicom data in
it, you should not delete it. Instead, rename that directory and
keep your command-line (changing the -i path to point to the new
dicom file but keeping the same subject name), or change the name
of the subject.
doug

On 09/14/2012 03:44 PM, Carolina Valencia wrote:

    the directory exists and trying without / doesn't change anything,
    any advice?
    One week ago, I was processing with the same command line with
    other subjects without problems,

    2012/9/14 Douglas N Greve <greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>

        And before you run this, does
    $SUBJECTS_DIR/HPTU_vol11_2012 exist?
        BTW, try it without a slash at the end of the name.
        doug

        On 09/14/2012 02:09 PM, Carolina Valencia wrote:

            Sure!

    cvalencia@cvalencia-Precision-WorkStation-T3400:~/freesurfer/subjects/volumetria$
            recon-all -s HPTU_vol11_2012/ -i
            HPTU_vol11_2012/dicom/MPRAGE.Ser1.Img0.dcm

            2012/9/14 Douglas N Greve <greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>
    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>

    <mailto:greve@nmr.mgh.harvard.edu
    <mailto:greve@nmr.mgh.harvard.edu>>>>

                What is your command line?
                doug

                On 09/14/2012 12:23 PM, Carolina Valencia wrote:
    > Hi Freesurfer users:
    >
    > I'm trying to run recon-all command in a single subject and
    > I don't know why always there is an error message about the
            names, I
    > tried the suggestionsin the message, rename the files, folders,
    > eliminate the folders etc
    > But I don't succeed to star to running my data.
    > Many thanks,
    >
    >
    > ERROR: You are trying to re-run an existing subject with
            (possibly)
    >  new input data (-i). If this is truly new input data, you
                should delete
    >  the subject folder and re-run, or specify a different
            subject name.
    >  If you are just continuing an analysis of an existing
            subject, then
    >  omit all -i flags.
    >
    > --
    > --
    > *Carolina Valencia Muñoz*
    >
    >
    >
    >
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-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
Phone Number: 617-724-2358 <tel:617-724-2358>
Fax: 617-726-7422 <tel:617-726-7422>

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-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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