OK, thanks Amelia. That's interesting - keep me posted if you run into this with 6.0 in any new data set.

________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Versace, Amelia [versacea@upmc.edu] Sent: Thursday, April 13, 2017 10:24 AM To: Freesurfer support list Subject: Re: [Freesurfer] trac-all -stat

Thanks, Anastasia!! It should be it. I had run the same command before with slightly fewer subjects in my "set subjlist" and it did work fine. Then I rerun the -path (and added extra 18 subjects) to update the tracts with the recent implementation that you have done (FS 6). After, started having this issue with -stat.... However, I ended up running the dmri_group after manually creating the *inputs.txt files and it did work fine... ;-) Thanks, Amelia

-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Yendiki, Anastasia Sent: Wednesday, April 12, 2017 5:04 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] trac-all -stat

Hi Amelia - This means that it can't find any of the tracts that you've specified (or any tracts period, if you haven't specified a list) for the subjects that you've specified in your config file. It'd be looking under:

/data/dprojects/BIOS/tracula/$subj/dpath/

Best, a.y

________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Versace, Amelia [versacea@upmc.edu] Sent: Wednesday, April 12, 2017 5:00 PM To: Freesurfer support list Subject: [Freesurfer] trac-all -stat

Hi Anastasia,

I am having some issues with the -stat option. Below is the error. I am not sure of what's causing the issue. Any idea? Thanks a lot!! Amelia

----------------- trac-all -c scripts/dmrirc.stats -stat

INFO: SUBJECTS_DIR is /data/dprojects/BIOS/freesurfer INFO: Diffusion root is /data/dprojects/BIOS/tracula Actual FREESURFER_HOME /data/software/freesurfer6 ERROR: no pathway reconstructions found ---------------------

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