I am having an issue where the sig.nii file created after running mkanalysis and slxavg sets the value in a high contrast region to zero. Any idea what could be the problem. I've attached an image of the problem.
Can you give more info like your mkanalysis command-line? What do you mean by "high contrast region"? No image file attached.
doug
Andrés Camarena wrote:
I am having an issue where the sig.nii file created after running mkanalysis and slxavg sets the value in a high contrast region to zero. Any idea what could be the problem. I've attached an image of the problem.
freesurfer@nmr.mgh.harvard.edu