Jin, David S. has shared a OneDrive for Business file with you. To view it, click the link below.

https://partnershealthcare-my.sharepoint.com/personal/david_jin_mgh_harvard_edu/Documents/Attachments/alreadyexists_recon-all.log [https://r1.res.office365.com/owa/prem/images/dc-generic_20.png]https://partnershealthcare-my.sharepoint.com/personal/david_jin_mgh_harvard_edu/Documents/Attachments/alreadyexists_recon-all.log

alreadyexists_recon-all.loghttps://partnershealthcare-my.sharepoint.com/personal/david_jin_mgh_harvard_edu/Documents/Attachments/alreadyexists_recon-all.log

Hi,

The command submitted was:

recon-all -autorecon2 -autorecon3 -subjid D31223 -openmp 4

The screen output was:

ERROR: /home/david/Desktop/JSS_FSnew/test_8core/D31223/label/lh.BA_exvivo.annot already exists

Linux locke 3.19.0-33-generic #38~14.04.1-Ubuntu SMP Fri Nov 6 18:17:28 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux

I have attached recon-all.log as "alreadyexists_recon-all.log"

Many thanks,

David

________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Bruce Fischl fischl@nmr.mgh.harvard.edu Sent: Wednesday, March 7, 2018 2:09:35 PM To: Freesurfer support list Subject: Re: [Freesurfer] lh.BA_exvivo.annot Already Exists Error

Hi David

can you send us the full command line, screen output and recon-all.log?

cheers Bruce On Wed, 7 Mar 2018, Jin, David S. wrote:

Hi,

On our machine, with FS6, when we try to run recon-all, FS throws an error of "lh.BA_exvivo.annot already exists" . However, upon deleting lh.BA_exvivo.annot, it still gives the same error. Has anybody else encountered this?

Many thanks,

David

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