Hello group,
This may be just a naive question, I tried finding answers in the archives but did not get a straight forward way to do it. So, I need the aseg and aparc files in fsaverage in the MNI152 space (181x217x181) so that it can be compared with data processed elsewhere. Is there an easy way to do this?
Thanks Koushik
Hi Koushik, I've attached a registration file that you can use with mri_label2vol which you can apply to aseg.mgz and aparc+aseg.mgz. I'll make this file available in $FREESURFER_HOME/average in future versions of FS.
doug
On 10/22/2012 11:34 AM, Govindarajan, Koushik Athreya wrote:
Hello group,
This may be just a naive question, I tried finding answers in the archives but did not get a straight forward way to do it. So, I need the aseg and aparc files in fsaverage in the MNI152 space (181x217x181) so that it can be compared with data processed elsewhere. Is there an easy way to do this?Thanks Koushik
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Many Thanks Doug. In this case, would my --temp be orig.mgz in fsaverage ?
Regards Koushik
________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Monday, October 22, 2012 10:54 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] converting to MNI152 space
Hi Koushik, I've attached a registration file that you can use with mri_label2vol which you can apply to aseg.mgz and aparc+aseg.mgz. I'll make this file available in $FREESURFER_HOME/average in future versions of FS.
doug
On 10/22/2012 11:34 AM, Govindarajan, Koushik Athreya wrote:
Hello group,
This may be just a naive question, I tried finding answers in the archives but did not get a straight forward way to do it. So, I need the aseg and aparc files in fsaverage in the MNI152 space (181x217x181) so that it can be compared with data processed elsewhere. Is there an easy way to do this?Thanks Koushik
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
nope, it would be the mni152 1mm volume doug
On 10/22/2012 12:14 PM, Govindarajan, Koushik Athreya wrote:
Many Thanks Doug. In this case, would my --temp be orig.mgz in fsaverage ?
Regards Koushik
From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Monday, October 22, 2012 10:54 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] converting to MNI152 space
Hi Koushik, I've attached a registration file that you can use with mri_label2vol which you can apply to aseg.mgz and aparc+aseg.mgz. I'll make this file available in $FREESURFER_HOME/average in future versions of FS.
doug
On 10/22/2012 11:34 AM, Govindarajan, Koushik Athreya wrote:
Hello group,
This may be just a naive question, I tried finding answers in the archives but did not get a straight forward way to do it. So, I need the aseg and aparc files in fsaverage in the MNI152 space (181x217x181) so that it can be compared with data processed elsewhere. Is there an easy way to do this?Thanks Koushik
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
freesurfer@nmr.mgh.harvard.edu
-
Douglas N Greve -
Govindarajan, Koushik Athreya