wow, looks like a pretty serious failure (which we rarely see). If you tar, gzip and ftp the entire subject dir for this subject we will take a look

cheers Bruce On Tue, 21 Aug 2018, Elena Nicole Dominguez wrote:

External Email - Use Caution

Thank you for getting back to me. I am attaching an example of one of the problems I am encountering.

On Tue, Aug 21, 2018 at 8:57 AM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Elena

  can you send us an image to show us what the issue is? The correct
  intervention depends on why the surface is not correct.

  cheers
  Bruce
  On Fri, 17 Aug 2018,
  Elena Nicole Dominguez wrote:

  >
  >         External Email - Use Caution        
  >
  > Hello FreeSurfer Developers,
  > On the tutorial it states that it is not possible to directly edit the location of a surface.
  > However, on the corresponding video posted onto the website the gentleman mentions being able to
  > accomplish this. I have been trying to locate the literature on how to do this and have not been
  > successful. I am using 'freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c'
  >
  > I would kindly appreciate some help on locating any tutorials or information available.
  >
  > Thank you for your help.
  >
  >_______________________________________________
  Freesurfer mailing list
  Freesurfer@nmr.mgh.harvard.edu
  https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


  The information in this e-mail is intended only for the person to whom it is
  addressed. If you believe this e-mail was sent to you in error and the e-mail
  contains patient information, please contact the Partners Compliance HelpLine at
  http://www.partners.org/complianceline . If the e-mail was sent to you in error
  but does not contain patient information, please contact the sender and properly
  dispose of the e-mail.

Hi Elena,

I've taken a look through the files you shared with us and can only find the complete subject directories for sub-90188_run-01_T1w and sub-90310. The subject directory for sub-01262 (and 209 other subjects) is empty. Could you please send another link with the subject directory for sub-01262?

Thanks,

Bram

________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Elena Nicole Dominguez endoming@uci.edu Sent: Wednesday, August 22, 2018 3:01:34 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Manually editing location of surface

External Email - Use Caution

The subject in particular is in their 90's. I have been seeing a similar occurrence in many of my other subjects as well. I will be attaching a link through google drive to share the subject I recently sent. (https://drive.google.com/a/uci.edu/file/d/1ZuekNGyEJ7gPbM3Yl3S8HeNMVLL60l0_/...)

Thank you for your help in looking into this and please let me know what else is needed on my behalf.

[https://drive-thirdparty.googleusercontent.com/16/type/application/x-gzip] sub-01262.tar.gzhttps://drive.google.com/a/uci.edu/file/d/1ZuekNGyEJ7gPbM3Yl3S8HeNMVLL60l0_/view?usp=drive_web

On Wed, Aug 22, 2018 at 8:44 AM Bruce Fischl <fischl@nmr.mgh.harvard.edumailto:fischl@nmr.mgh.harvard.edu> wrote: wow, looks like a pretty serious failure (which we rarely see). If you tar, gzip and ftp the entire subject dir for this subject we will take a look

cheers Bruce On Tue, 21 Aug 2018, Elena Nicole Dominguez wrote:

    External Email - Use Caution

Thank you for getting back to me. I am attaching an example of one of the problems I am encountering.

On Tue, Aug 21, 2018 at 8:57 AM Bruce Fischl <fischl@nmr.mgh.harvard.edumailto:fischl@nmr.mgh.harvard.edu> wrote: Hi Elena

  can you send us an image to show us what the issue is? The correct
  intervention depends on why the surface is not correct.

  cheers
  Bruce
  On Fri, 17 Aug 2018,
  Elena Nicole Dominguez wrote:

  >
  >         External Email - Use Caution
  >
  > Hello FreeSurfer Developers,
  > On the tutorial it states that it is not possible to directly edit the location of a surface.
  > However, on the corresponding video posted onto the website the gentleman mentions being able to
  > accomplish this. I have been trying to locate the literature on how to do this and have not been
  > successful. I am using 'freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c'
  >
  > I would kindly appreciate some help on locating any tutorials or information available.
  >
  > Thank you for your help.
  >
  >_______________________________________________
  Freesurfer mailing list
  Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu>
  https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


  The information in this e-mail is intended only for the person to whom it is
  addressed. If you believe this e-mail was sent to you in error and the e-mail
  contains patient information, please contact the Partners Compliance HelpLine at
  http://www.partners.org/complianceline . If the e-mail was sent to you in error
  but does not contain patient information, please contact the sender and properly
  dispose of the e-mail.

---

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The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.