Can you just read it in with python or something and write it out in one of our supported formats (like .lta)?

-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Douglas N. Greve Sent: Friday, October 8, 2021 1:36 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Fmriprep transform matrix

Sorry, I don't know what h5 format is.

On 10/5/2021 4:30 AM, I. Kelleher-Unger wrote:

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Hi there,

I have used fmriprep to preprocess my BOLD data. One of the outputs of this pipeline is a T1w-to-MNI transformation matrix in h5 format.

I wanted to know if it is possible to apply this transformation with freesurfer tools?

Thanks! Isaac

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