mri_binarize is a freesurfer command-line program and --wm is an option to that program.

On 10/03/2014 02:09 AM, Leise Borg wrote:

Hi FreeSurfer

I need the white matter segmentations, and I've looked at some e-mail correspondence and one answer I think I can use is the following:

If you just want white matter, then better to create a mask from the

aparc+aseg.mgz with mri_binarize with the --wm flag.

doug

I just don't understand what it means.. I do have the aparc+asset.mgz, but what is a mri_binarize and --wm flag? I don’t have FreeSurfer installed on my on computer.

All the best, Leise.

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