External Email - Use Caution

Hi FreeSurfer community,

I try to ues fspalm to correct multiple comparisons for a surface-based thickness analysis. Below is the code I use:

python fspalm --glmdir Home/*/lh.group.glmdir --cft 1.3 --cwp .5 --onetail --name palm_onetail_1.3 --iters 1000 --2spaces

The analysis starts successfully until runs "palm prep complete". Then it tries to run the generated matlab script. Matlab seems to start correctly. Afterwards I get the following error: Undefined function or variable 'palm',

followed by this error: cannot find expected palm output "fsp_clustere_tstat_fewp_c1.mgz" . check for run_palm.m failures

I guess there is a communication problem between the terminal and matlab/palm. Palm is included in the matlab path and I'am able to start palm within matlab.

Any help with fixing this error would be appreciated.

Thanks,

Janina