External Email - Use Caution
Hi Bruce,
Thank you very much for the information. It is very useful. I'm taking a look at both possibilities.
Regarding the second option you gave me:
you can just run through the list of vertices and find the one that is
closest to your MNI coord
What file should I use to find the coordinates correspondence? Should I use [l/r].pial? Or maybe [l/r].orig?
Do you think it is a good idea to load that file in matlab and look for the closest coordinates there, and see what vertex index those coordinates correspond to?
Thank you in advance.
Best wishes, Marina
Hi Marina
which surface you use depends on why you are trying to find the vertices
cheers Bruce
On Wed, 29 Apr 2020, Marina Fernández wrote:
External Email - Use Caution
Hi Bruce, Thank you very much for the information. It is very useful. I'm taking a look at both possibilities.
Regarding the second option you gave me:
you can just run through the list of vertices and find the one that is closest to your MNI coordWhat file should I use to find the coordinates correspondence? Should I use [l/r].pial? Or maybe [l/r].orig?
Do you think it is a good idea to load that file in matlab and look for the closest coordinates there, and see what vertex index those coordinates correspond to?
Thank you in advance.
Best wishes, Marina
External Email - Use Caution
Hi Marina,
We do have a utility to convert from MNI152 to fsaverage space: https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/registratio...
Not sure if this is what you need.
Regards, Thomas
On Wed, Apr 29, 2020 at 7:07 PM Marina Fernández < marina.fdez.alvarez@gmail.com> wrote:
External Email - Use CautionHi Bruce,
Thank you very much for the information. It is very useful. I'm taking a look at both possibilities.
Regarding the second option you gave me:
you can just run through the list of vertices and find the one that is
closest to your MNI coord
What file should I use to find the coordinates correspondence? Should I use [l/r].pial? Or maybe [l/r].orig?
Do you think it is a good idea to load that file in matlab and look for the closest coordinates there, and see what vertex index those coordinates correspond to?
Thank you in advance.
Best wishes, Marina _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Bruce Fischl -
Marina Fernández -
Thomas Yeo