I am also using dcm2nii and running recon-all with the original image. It is working ok so far.

Alfredo

Date: Fri, 2 Sep 2011 12:30:26 -0400 From: greve@nmr.mgh.harvard.edu To: cvalencia@linkdx.com.co CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] dcm2nii and recon all

I have no idea, but probably the original. doug

Carolina Valencia wrote:

...

Dear FS' users,

I have a 3D T1 from a GE scanner which I convert with dcm2nii to use it with recon-all, but I got 3 images: o -- original oo -- orthogonal co -- cropped image

Which I should use to run the command recon-all?

thanks!

Carolina

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