External Email - Use Caution
Dear Freesurfer experts,
I am trying to use ADNI MERGE R package to get 'wholebrain' volume.
It requires <Left/Right>CerebralCortex. The information I get from ADNI merge is "Volume (WM Parcellation) of RightCerebralCortex".
But when I ran Freesurfer reconall 6.0, I could not find <Left/Right>CerebralCortex under 'stats' folder, do you know where it could be? Thanks so much.
Best Regards, An Lijun
You can find it in aseg.stats under
# Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 272816.537999, mm^3 # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 260016.082731, mm^3 # Measure Cortex, CortexVol, Total cortical gray matter volume, 532832.620730, mm^3
On 11/13/19 11:54 PM, An Lijun wrote:
External Email - Use Caution
Dear Freesurfer experts,
I am trying to use ADNI MERGE R package to get 'wholebrain' volume.
It requires <Left/Right>CerebralCortex. The information I get from ADNI merge is "*Volume (WM Parcellation) of RightCerebralCortex*".
But when I ran Freesurfer reconall 6.0, I could not find <Left/Right>CerebralCortex under 'stats' folder, do you know where it could be? Thanks so much.
Best Regards, An Lijun
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Thanks for your reply! You mean LeftCerebralCortex is actually lhCortex in aseg.stats, right?
Best Regards, An Lijun
Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edumailto:DGREVE@mgh.harvard.edu> 于2019年11月19日周二 上午2:20写道： You can find it in aseg.stats under
# Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 272816.537999, mm^3 # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 260016.082731, mm^3 # Measure Cortex, CortexVol, Total cortical gray matter volume, 532832.620730, mm^3
On 11/13/19 11:54 PM, An Lijun wrote:
External Email - Use CautionDear Freesurfer experts,
I am trying to use ADNI MERGE R package to get 'wholebrain' volume.
It requires <Left/Right>CerebralCortex. The information I get from ADNI merge is "*Volume (WM Parcellation) of RightCerebralCortex*".
But when I ran Freesurfer reconall 6.0, I could not find <Left/Right>CerebralCortex under 'stats' folder, do you know where it could be? Thanks so much.
Best Regards, An Lijun
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
yes
On 11/18/19 8:59 PM, An Lijun wrote:
External Email - Use Caution
Thanks for your reply! You mean LeftCerebralCortex is actually lhCortex in aseg.stats, right?
Best Regards, An Lijun
Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu mailto:DGREVE@mgh.harvard.edu> 于2019年11月19日周二 上午2:20写道：
You can find it in aseg.stats under # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 272816.537999, mm^3 # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 260016.082731, mm^3 # Measure Cortex, CortexVol, Total cortical gray matter volume, 532832.620730, mm^3 On 11/13/19 11:54 PM, An Lijun wrote: > > External Email - Use Caution > > Dear Freesurfer experts, > > I am trying to use ADNI MERGE R package to get 'wholebrain' volume. > > It requires <Left/Right>CerebralCortex. The information I get from > ADNI merge is "*Volume (WM Parcellation) of RightCerebralCortex*". > > But when I ran Freesurfer reconall 6.0, I could not > find <Left/Right>CerebralCortex under 'stats' folder, do you know > where it could be? Thanks so much. > > Best Regards, > An Lijun > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
An Lijun -
Greve, Douglas N.,Ph.D.