what do you mean by "one image"? If one volume, then just run it normally, something like

recon-all -s subjectname -i volume.img -all

We recommend that people not use analyze because analyze does not store information about orientation, so you could get a left-right reversal.

doug

ayumi@haskins.yale.edu wrote:

Hi,

I am analyzing structural data (analyze format). How can I run autorecon with one image? A similar question was already asked on 14 Jun 2008, but I couldn’t find how to run it.

Thanks,

Amy

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