Can you send the recon-all.log file?

On 4/24/2019 10:05 PM, chen wrote:

External Email - Use Caution

Dear All, I ran recon-all using single MPRAGE data set. Processing exited with an error pasted below indicating there is not fsaverage/surf/lh.sphere.reg. According to the fsaverage-recon-all.log, it completed without error. I was able to run a subject before without any error not sure why all the subjects I ran now over the weekend ended up with same error.

[cid:part1.58CC037F.8313B753@mgh.harvard.edu]

Secondly, i have studied the multi-site reliability of young traveling subjects which scanned in multi-site with the same scanner and protocol across 12 month. I ran these data with cross-pipeline. But, our results showed that the amygdala volumes have significantly lower reproducibility in inter-site than hippocampus and entorhinal cortex (ICC scores less than 0.5) with FreeSurfer rather than manual tracing. So, i want to assure that recon-all -all is the optimal process pipeline. If not, can you give me some advice? Should i use the longitudinal pipeline in multi-site study with traveling subjects?

Thanks.

------------------ 首都医科大学宣武医院 杜佳晨

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer