External Email - Use Caution
Hi everybody,
after finishing my group analysis I am currently trying to run a ROI analysis. However I have some problems/general questions. I am trying to draw a ROI on fsaverage in order to use the mri_label2label command afterwards. I opened Freeview, clicked on "load surface" first and then chose lh.inflated_avg (fsaverage -> surf) which worked fine but I cant choose "New ROI" (in order to crate the ROI).
So is it possible to draw a ROI when focussing only on the surface? And if this is the case why cant I? Did I chose the wrong file? I am really thankful for any help!!
Larissa
Hi Larissa,
The latest development version of freeview supports drawing labels on surface. You can take a look here on how to update freeview:
https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview
In the latest version, you can draw paths on surface and use custom fill to create/edit labels, just like in tksurfer.
Best, Ruopeng
On 1/7/19 11:22 AM, Larissa Bechtle wrote:
External Email - Use CautionHi everybody,
after finishing my group analysis I am currently trying to run a ROI analysis. However I have some problems/general questions. I am trying to draw a ROI on fsaverage in order to use the mri_label2label command afterwards. I opened Freeview, clicked on "load surface" first and then chose lh.inflated_avg (fsaverage -> surf) which worked fine but I cant choose "New ROI" (in order to crate the ROI).
So is it possible to draw a ROI when focussing only on the surface? And if this is the case why cant I? Did I chose the wrong file? I am really thankful for any help!!
Larissa
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Hi Ruopeng,
Thank you very much for your quick answer and advice. So I am going to update freeview! Thanks! Larissa
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Am 07.01.19 um 17:35 schrieb Ruopeng Wang
Hi Larissa,
The latest development version of freeview supports drawing labels on surface. You can take a look here on how to update freeview:
https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview
In the latest version, you can draw paths on surface and use custom fill to create/edit labels, just like in tksurfer.
Best, Ruopeng
On 1/7/19 11:22 AM, Larissa Bechtle wrote:
External Email - Use CautionHi everybody,
after finishing my group analysis I am currently trying to run a ROI analysis. However I have some problems/general questions. I am trying to draw a ROI on fsaverage in order to use the mri_label2label command afterwards. I opened Freeview, clicked on "load surface" first and then chose lh.inflated_avg (fsaverage -> surf) which worked fine but I cant choose "New ROI" (in order to crate the ROI).
So is it possible to draw a ROI when focussing only on the surface? And if this is the case why cant I? Did I chose the wrong file? I am really thankful for any help!!
Larissa
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu