Hello,
I'm trying to extract freesurfer generated labels BA4a, BA4p, and BA6. Are these labels (#404, 405, and 406) generated for each subject? If so, could you please tell me which file to extract them from? I don't fully understand how freesurfer organizes these labels compared to, say, cortical structures.
Thanks! -bgroisse
HI Benjamin,
they should be in each subject's label directory named things like lh.BA4p.label
Bruce
On Mon, 1 Feb 2010, Benjamin Groisser wrote:
Hello,
I'm trying to extract freesurfer generated labels BA4a, BA4p, and BA6. Are these labels (#404, 405, and 406) generated for each subject? If so, could you please tell me which file to extract them from? I don't fully understand how freesurfer organizes these labels compared to, say, cortical structures.
Thanks! -bgroisse _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
not just yet! they will in the next release. however, you can easily map the labels from the fsaverage subject (included in the freesurfer/subjects dir) to your subject with something like:
foreach balabel (BA1 BA2 BA3a BA3b BA4a BA4p BA6 BA44 BA45 V1 V2 MT) set cmd = (mri_label2label --srcsubject fsaverage \ --srclabel $SUBJECTS_DIR/fsaverage/label/${hemi}.${balabel}.label \ --trgsubject $subjid \ --trglabel ./${hemi}.${balabel}.label \ --hemi ${hemi} \ --regmethod surface)
see also http://surfer.nmr.mgh.harvard.edu/fswiki/BrodmannAreaMaps
n.
On Mon, 2010-02-01 at 13:26 -0500, Bruce Fischl wrote:
HI Benjamin,
they should be in each subject's label directory named things like lh.BA4p.label
Bruce
On Mon, 1 Feb 2010, Benjamin Groisser wrote:
Hello,
I'm trying to extract freesurfer generated labels BA4a, BA4p, and BA6. Are these labels (#404, 405, and 406) generated for each subject? If so, could you please tell me which file to extract them from? I don't fully understand how freesurfer organizes these labels compared to, say, cortical structures.
Thanks! -bgroisse _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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