External Email - Use Caution
Dear FreeSurfer developers,
I have an fMRI data and using the command “selxavg3-sess -s ./SM/Analysis_3_12 -analysis BioMot_Block_RL_self0m.rh -run-wise -no-con-ok”, analysis of right hemisphere is finished correctly.
While for the analysis of left hemisphere as I run “selxavg3-sess -s ./SM/Analysis_3_12 -analysis BioMot_Block_RL_self0m.lh -run-wise -no-con-ok”, I receive the following error:
…
$Id: fast_selxavg3b.m,v 1.4 2016/05/04 22:16:47 greve Exp $ ------------------------- outtop = /Users/elaheyargholi/Documents/Action_Project/July_2018/SM Extension format = nii.gz INFO: key nSliceGroups unrecognized, line 12, skipping 1 Colors_RGB.mat Reference to non-existent field 'RmPreStim'.
Error in fast_ldanaflac (line 518) flac.con(nthcon).rmprestim = cspec.RmPreStim; % 4/8/09
Error in fast_selxavg3b (line 107) flac0 = fast_ldanaflac(analysis);
ERROR: fast_selxavg3() failed\n
It should be mentioned that flags of mkanalysis-sess have the same values for both hemispheres.
I do appreciate your attention.
Best Regards, Elahe'
Not sure what the problem is. The "unrecognized" warning is not a problem. What is your mkanalysis-sess command line? What version of FS are you running? You can try just deleting the LH and re-running mkanalysis and selxavg
On 10/20/18 12:33 PM, elahe' yargholi wrote:
External Email - Use Caution
Dear FreeSurfer developers,
I have an fMRI data and using the command “selxavg3-sess -s ./SM/Analysis_3_12 -analysis BioMot_Block_RL_self0m.rh -run-wise -no-con-ok”, analysis of right hemisphere is finished correctly.
While for the analysis of left hemisphere as I run “selxavg3-sess -s ./SM/Analysis_3_12 -analysis BioMot_Block_RL_self0m.lh -run-wise -no-con-ok”, I receive the following error:
…
$Id: fast_selxavg3b.m,v 1.4 2016/05/04 22:16:47 greve Exp $ ------------------------- outtop = /Users/elaheyargholi/Documents/Action_Project/July_2018/SM Extension format = nii.gz INFO: key nSliceGroups unrecognized, line 12, skipping 1 Colors_RGB.mat Reference to non-existent field 'RmPreStim'.
Error in fast_ldanaflac (line 518) flac.con(nthcon).rmprestim = cspec.RmPreStim; % 4/8/09
Error in fast_selxavg3b (line 107) flac0 = fast_ldanaflac(analysis);
ERROR: fast_selxavg3() failed\n
It should be mentioned that flags of mkanalysis-sess have the same values for both hemispheres.
I do appreciate your attention.
Best Regards, Elahe'
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External Email - Use Caution
On Oct 20, 2018, at 8:03 PM, Elahe' Yargholi elahe.yargholi@gmail.com wrote:
Dear FreeSurfer developers,
I have an fMRI data and using the command “selxavg3-sess -s ./SM/Analysis_3_12 -analysis BioMot_Block_RL_self0m.rh -run-wise -no-con-ok”, analysis of right hemisphere is finished correctly.
While for the analysis of left hemisphere as I run “selxavg3-sess -s ./SM/Analysis_3_12 -analysis BioMot_Block_RL_self0m.lh -run-wise -no-con-ok”, I receive the following error:
…
$Id: fast_selxavg3b.m,v 1.4 2016/05/04 22:16:47 greve Exp $
outtop = /Users/elaheyargholi/Documents/Action_Project/July_2018/SM Extension format = nii.gz INFO: key nSliceGroups unrecognized, line 12, skipping 1 Colors_RGB.mat Reference to non-existent field 'RmPreStim'.
Error in fast_ldanaflac (line 518) flac.con(nthcon).rmprestim = cspec.RmPreStim; % 4/8/09
Error in fast_selxavg3b (line 107) flac0 = fast_ldanaflac(analysis);
ERROR: fast_selxavg3() failed\n
It should be mentioned that flags of mkanalysis-sess have the same values for both hemispheres.
I do appreciate your attention.
Best Regards, Elahe'
freesurfer@nmr.mgh.harvard.edu
-
elahe' yargholi -
Greve, Douglas N.,Ph.D.