All,
I'm setting up a processing stream for a sizable dataset and I'd like to use .tcl scripts to save out images for some preliminary quality control checks. It was my intention to output images of the the curvature and structural parcelation overlaid on the inflated surface (6 views for each hemi) and the lh/rh.white and aseg.mgz segmentation overlaid on the volume (a midline coronal, sagital, and axial slice). The idea would be that then we could go through and quickly check which subjects may need manual intervention.
I wanted to double check that the images I am saving out are consistent with the checks that other folks are doing and I'd love to get some feedback on what else I should look save.
Thanks, Avram
Hi Avram,
that all souds reasonable to me.
cheers Bruce On Thu, 16 Sep 2010, Avram Holmes wrote:
All,
I'm setting up a processing stream for a sizable dataset and I'd like to use .tcl scripts to save out images for some preliminary quality control checks. It was my intention to output images of the the curvature and structural parcelation overlaid on the inflated surface (6 views for each hemi) and the lh/rh.white and aseg.mgz segmentation overlaid on the volume (a midline coronal, sagital, and axial slice). The idea would be that then we could go through and quickly check which subjects may need manual intervention.
I wanted to double check that the images I am saving out are consistent with the checks that other folks are doing and I'd love to get some feedback on what else I should look save.
Thanks, Avram
see also this page:
http://surfer.nmr.mgh.harvard.edu/fswiki/QATools
On Thu, 2010-09-16 at 14:13 -0400, Bruce Fischl wrote:
Hi Avram,
that all souds reasonable to me.
cheers Bruce On Thu, 16 Sep 2010, Avram Holmes wrote:
All,
I'm setting up a processing stream for a sizable dataset and I'd like to use .tcl scripts to save out images for some preliminary quality control checks. It was my intention to output images of the the curvature and structural parcelation overlaid on the inflated surface (6 views for each hemi) and the lh/rh.white and aseg.mgz segmentation overlaid on the volume (a midline coronal, sagital, and axial slice). The idea would be that then we could go through and quickly check which subjects may need manual intervention.
I wanted to double check that the images I am saving out are consistent with the checks that other folks are doing and I'd love to get some feedback on what else I should look save.
Thanks, Avram
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