You'll see we have a few Qs!
We have been having problems with a couple datasets with patients who have severe atrophy (MS and Alzheimer's) where they fail in autorecon1 with the Talairach QA check. The registrations look fine so I was wondering what other problems might cause this check to fail. Is there a simple way to bypass the Talairach QA step in recon-all -autorecon1 if we are satisfied with the registration?
Damian
Dr Damian Jenkins Department of Clinical Neurology Oxford University
Damian,
The talairach check can be bypassed with the -notal-check flag added to recon-all.
Nick
On Thu, 2008-04-24 at 17:02 +0100, Damian Jenkins wrote:
You'll see we have a few Qs!
We have been having problems with a couple datasets with patients who have severe atrophy (MS and Alzheimer's) where they fail in autorecon1 with the Talairach QA check. The registrations look fine so I was wondering what other problems might cause this check to fail. Is there a simple way to bypass the Talairach QA step in recon-all -autorecon1 if we are satisfied with the registration?
Damian
Dr Damian Jenkins Department of Clinical Neurology Oxford University
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Damian Jenkins -
Nick Schmansky