Hi Doro

it's hard to tell from your image, but it looks like at least one of your cps is not in wm but in the gm. This will mess everything up. Make sure that they are in unpartial-volumed wm

cheers Bruce On Tue, 3 Mar 2020, Meike Hettwer wrote:

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Dear Freesurfer Team,

I am currently performing manual edits using freesurfer v. 6.0.1. (on Debian /Linux 7). While brainmask edits work perfectly, the control points i set (mainly in temporal and frontopolar regions, running recon-all -autorecon2-cp -autorecon3) either have no effect at all or even make the situation worse (see screenshots attached). Do you have any idea why that might be and how I could fix that? I also tried editing the wm.mgz, but it didn't improve the segmentation.

Thanks a lot,

Doro