Nam, did the command-lines work for those same subjects for which the GUI failed? I prefer the command-line operation, in any case.

Hi Nam,

this depends on the quality of the scans, the subject positioning, and the quality of the MNI talairaching.

Bruce

On Wed, 5 Jan 2005, Joongnam Yang wrote:

...

Hi,

For some subjects' data, pure Csurf GUI works, while for other subjects Csurf GUI complains, giving errors during "create surface", upon which I have to run the command-line option "recon-all -stage1" with CC and pons coordinates.

Is it ture, I mean the Csurf GUI is unpredictable, because of the

nature of

...

the algorithm?

Comments appreciated.

Nam. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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