run this command
sudo rm -rf $FREESURFER_HOME
2011/2/21 Carolina Valencia cvalencia@linkdx.com.co
Thanks Pedro,
How I uninstall that version to re-install the correct version? I look for some answers and try
rm -rf $FREESURFER_HOME
It says that I don't have permission,how I can unistall it, if i'm the admin user?
Thanks in advance,
Carolina
2011/2/21 Pedro Paulo de Magalhães Oliveira Junior ppj@netfilter.com.br
It seems you are running the 64-bit version of FreeSurfer in a 32-bit OS
2011/2/21 Carolina Valencia cvalencia@linkdx.com.co
Linux cvalencia-Precision-WorkStation-T3400 2.6.35-25-generic-pae #44-Ubuntu SMP Fri Jan 21 19:01:46 UTC 2011 i686 GNU/Linux
Thanks,
2011/2/21 Pedro Paulo de Magalhães Oliveira Junior <ppj@netfilter.com.br
Please send the result of the command:
uname -a
On Mon, Feb 21, 2011 at 10:31, Carolina Valencia < cvalencia@linkdx.com.co> wrote:
Hi Bruce,
I'm experimenting problems with the installation on Ubuntu too. There's is warning in the welcome message, it seems that something is missing:
-------- freesurfer-Linux-centos4_x86_64-stable-pub-v5.0.0 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) WARNING: /home/cvalencia/Descargas/freesurfer/fsfast does not exist FREESURFER_HOME /home/cvalencia/Descargas/freesurfer FSFAST_HOME /home/cvalencia/Descargas/freesurfer/fsfast FSF_OUTPUT_FORMAT nii SUBJECTS_DIR /home/cvalencia/Descargas/freesurfer/subjects MNI_DIR /home/cvalencia/Descargas/freesurfer/mni FSL_DIR /usr/share/fsl/4.1
I try to test it and it shows cvalencia@cvalencia-Precision-WorkStation-T3400:~$ tkmedit /home/cvalencia/Descargas/freesurfer/bin/tkmedit.bin: Formato de ejecutable incorrecto. Binary file not executable.
Thanks a lot,
Carolina
2011/2/18 Bruce Fischl fischl@nmr.mgh.harvard.edu
Hi Jie,
what hardware are you using? Is it a 64 bit operating system?
cheers Bruce
On Sat, 19 Feb 2011, Liukarl wrote:
> > > > > > > > > Hello, Freesurfer experts: > > > > I am new to freesurfer and try to > install the newest version of freesurfer in Ubuntu system. I closely > followed the instructions, and the only difference is that I > installed it in my Documents, instead of local folder. > > > > Below is the output after “source > $FREESURFER_HOME/SetUpFreeSurfer.sh” > > > > -------- > freesurfer-Linux-centos4-stable-pub-v5.0.0 -------- > > Setting up environment for > FreeSurfer/FS-FAST (and FSL) > > FREESURFER_HOME > /home/jie/Documents/freesurfer/ > > FSFAST_HOME > /home/jie/Documents/freesurfer//fsfast > > FSF_OUTPUT_FORMAT nii > > SUBJECTS_DIR > /home/jie/Documents/freesurfer//subjects > > MNI_DIR > /home/jie/Documents/freesurfer//mni > > > > > Everything seems fine and I also added > the .license file to the freesurfer folder. > > > > But when I test it by “tkmedit bert > orig.mgz”, it reponds “Illegal instruction” > > > > If I type in “recon-all”, it will > show > > “ Required Arguments: > > -subjid <subjid> > > -<process directive>…... > ” > and the other arguments. > > > > How to fix the problem and make > Fressurfer run? Any help is appreciated. Thanks a lot! > > > > Jie >
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
--
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
--
freesurfer@nmr.mgh.harvard.edu
-
Pedro Paulo de Magalhães Oliveira Junior