When you open it for instance with SPM or MRIcro....
--- Jose Luis Cantero, Ph.D. Laboratory of Functional Neuroscience Department of Physiology, Anatomy, and Cellular Biology University Pablo de Olavide Ctra. de Utrera, Km.1 41013 - Sevilla - Spain -
Phone: +34 954 977433 Fax: +34 954 349151 Email: jlcanlor@upo.es http://www.upo.es/neuroaging/es/
----- Mensaje original ----- De: Bruce Fischl fischl@nmr.mgh.harvard.edu Fecha: Lunes, Marzo 9, 2009 5:19 pm Asunto: Re: [Freesurfer] Aseg
Hi Kelly,
when you open it in what? The volume doesn't contain any information about the semantics - just label indices (into the FreeSurferColorLUT.txt file). Things like tkmedit are smart enough to go and find that file and lookup the label indices to find names and colors, assuming you tell tkmedit that it is a segmentaton.
cheers, Bruce
On Mon, 9 Mar 2009, Kelly Silva wrote:
Hello, I did the conversion of aseg.mgz to analyze format, but when I
open it, it appears only with the coordinates and not with the "seg ids". How can I do that?
By the way, is there any posibility to open the
"asegstatsLUT.txt" together with the aseg.hdr/aseg.img?
Thanks, Kelly
Veja quais são os assuntos do momento no Yahoo! +Buscados
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
sorry, I don't know where they expect to get their information from for displaying colors/names On Mon, 9 Mar 2009, Jose Luis Cantero Lorente wrote:
When you open it for instance with SPM or MRIcro....
Jose Luis Cantero, Ph.D. Laboratory of Functional Neuroscience Department of Physiology, Anatomy, and Cellular Biology University Pablo de Olavide Ctra. de Utrera, Km.1 41013 - Sevilla
- Spain -
Phone: +34 954 977433 Fax: +34 954 349151 Email: jlcanlor@upo.es http://www.upo.es/neuroaging/es/
----- Mensaje original ----- De: Bruce Fischl fischl@nmr.mgh.harvard.edu Fecha: Lunes, Marzo 9, 2009 5:19 pm Asunto: Re: [Freesurfer] Aseg
Hi Kelly,
when you open it in what? The volume doesn't contain any information about the semantics - just label indices (into the FreeSurferColorLUT.txt file). Things like tkmedit are smart enough to go and find that file and lookup the label indices to find names and colors, assuming you tell tkmedit that it is a segmentaton.
cheers, Bruce
On Mon, 9 Mar 2009, Kelly Silva wrote:
Hello, I did the conversion of aseg.mgz to analyze format, but when I
open it, it appears only with the coordinates and not with the "seg ids". How can I do that?
By the way, is there any posibility to open the
"asegstatsLUT.txt" together with the aseg.hdr/aseg.img?
Thanks, Kelly
Veja quais são os assuntos do momento no Yahoo! +Buscados
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Jose Luis Cantero Lorente