Hi,

All the steps of recon-all are set to save any manual edits you make unless you specify otherwise. autorecon2-cp will use any previous wm edits, as well as any previous edits you have made to the brainmask.mgz volume.

In the event that you do NOT want your edits to be saved and used you can specify flags to write over them. There is a list of these flags, and others here: https://surfer.nmr.mgh.harvard.edu/fswiki/OtherUsefulFlags

Jenni

On Wed, 3 Jan 2007, Shi, Bo wrote:

Does

recon-all -autorecon2-cp ...

Remove all previous manual white-matter edits? Is there a way I can prevent this?