Hello,
I am a new freesurfer user. I tried to view subject data with tkmedit for the first time after the recon-all process finished without errors. Here is what I typed and the message I got:
[ariana:~/Desktop/ELISSA_ THESIS/ATO] cmurphy% tkmedit ATO brainmask.mgz -aux T1.mgz -surfs -aseg Wed Oct 16 14:35:57 ariana.local tkmedit.bin[66069] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged. xp_init: error: not initialized error: invalid CoreGraphics connection Abort
Can someone explain this error message? Despite that the recon-all log said that the subject was completed without error, there were several places in the log that read invalid. Is this normal?
Also, I realized that I have an older version of freesurfer and should upgrade. Should I delete the former version and re-install with new version?
Thank you for your help, E
Hi Elissa
has tkmedit ever worked? This looks like an internal mac problem. For example, a google search turns up:
https://discussions.apple.com/message/12614494#12614494
does freeview work? As far as the invalid messages go, you'll need to send us the details for us to comment.
And yes, updating to the newest version is a good idea, and might fix this cheers Bruce
On Wed, 16 Oct 2013, Elissa McIntosh wrote:
Hello,
I am a new freesurfer user. I tried to view subject data with tkmedit for the first time after the recon-all process finished without errors. Here is what I typed and the message I got:
[ariana:~/Desktop/ELISSA_THESIS/ATO] cmurphy% tkmedit ATO brainmask.mgz -aux T1.mgz -surfs -aseg Wed Oct 16 14:35:57 ariana.local tkmedit.bin[66069] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged. xp_init: error: not initialized error: invalid CoreGraphics connection Abort
Can someone explain this error message? Despite that the recon-all log said that the subject was completed without error, there were several places in the log that read invalid. Is this normal?
Also, I realized that I have an older version of freesurfer and should upgrade. Should I delete the former version and re-install with new version?
Thank you for your help, E
freesurfer@nmr.mgh.harvard.edu