Hi Iven,

is there a reason you don't want to just run recon-all -all? It's more time for the computer, but no more for you and will give you a lot more measures

cheers Bruce

On Wed, 20 Jul 2011, Fellhauer, Iven wrote:

Dear All,

I want to calculate the volume of WM, GM and CSF. First of all I have converted the .mri files to .mgz files. I have checked the ReconAllDevTable page to get the recon-all switches to calculate the volume of GM, WM and CFS.

I want to use the following switches to calculate the volume, but I' m not sure if this works/is right: recon-all -autorecon1 - gcareg -canorm -careg -rmneck -skull-lta -calabel -segstatts -subject <subject>

Did I miss something? Is there a better/faster way to get/calculate the volumes? The command returns the correct results?

Best regards,

Iven Fellhauer

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