You can run mri_surfcluster to get basic statistics. If you want cluster p-values, you will need to run a simulation (mri_glmfit-sim), or you can pass mri_surfcluster a simulation table that we distribute here:

ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mult-comp-cor.tar.gz

future versions will do this automatically

doug

Mayuresh wrote:

Hello Freesurfer authors/users,

Does anyone know how to obtain a results summary of the qdec/mri_glmfit analysis similar to SPM output table style? Basically I see a bunch of significant areas in my qdec analysis, and I want to report these in a summary table for eg. coordinates at peak, t or z value, p value, area size.

Thanks for any suggestions, Mayuresh

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