Re: [Freesurfer] Errors on the Linux86_64 GNU machine - Freesurfer

15 Sep 2008


      HweeLing,
This line:
Linux zeus.AC.kyb.local 2.6.18-53.1.4.el5 #1 SMP Fri Nov 30 00:45:16 EST
2007 i686 i686 i386 GNU/Linux
indicates that your OS is 32bit.  try the freesurfer centos4 install,
or, alternatively, if you're sure you have a 64bit machine (see uname -
m), then boot the 64bit OS.
Nick
On Mon, 2008-09-15 at 16:05 +0200, Hwee Ling Lee wrote:
...
Hi,
I tried to convert DICOM images into freesurfer compatible images
using a linux machine.
However, I get this error message:
[hweeling@zeus hweeling]$ recon-all -
i /home/raid/hweeling/DICOM/AVE02_S15.MR.MPI_STANDARD_USERS.8.2.2008.04.08.11.29.54.171875.29050922.IMA -s S15_fs
INFO: SUBJECTS_DIR is /home/raid/hweeling/freesurfer/subjects
Actual FREESURFER_HOME /home/raid/hweeling/freesurfer
Linux zeus.AC.kyb.local 2.6.18-53.1.4.el5 #1 SMP Fri Nov 30 00:45:16
EST 2007 i686 i686 i386 GNU/Linux
/home/raid/hweeling/freesurfer//bin/mri_convert: Exec format error.
Binary file not executable.
/home/raid/hweeling/freesurfer//bin/flirt: Exec format error. Binary
file not executable.
/home/raid/hweeling/freesurfer//bin/mri_convert: Exec format error.
Binary file not executable.
/home/raid/hweeling/freesurfer//bin/tkregister2_cmdl: Exec format
error. Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mri_normalize: Exec format error.
Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mri_watershed: Exec format error.
Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mri_segment: Exec format error.
Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mri_label2label: Exec format
error. Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mri_em_register: Exec format
error. Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mri_ca_normalize: Exec format
error. Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mri_ca_register: Exec format
error. Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mri_ca_label: Exec format error.
Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mri_pretess: Exec format error.
Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mri_fill: Exec format error.
Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mri_tessellate: Exec format error.
Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mri_concatenate_lta: Exec format
error. Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mri_normalize_tp2: Exec format
error. Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mris_smooth: Exec format error.
Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mris_inflate: Exec format error.
Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mris_curvature: Exec format error.
Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mris_sphere: Exec format error.
Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mris_fix_topology: Exec format
error. Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mris_topo_fixer: Exec format
error. Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mris_ca_label: Exec format error.
Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mris_euler_number: Exec format
error. Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mris_make_surfaces: Exec format
error. Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mris_register: Exec format error.
Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mris_anatomical_stats: Exec format
error. Binary file not executable.
/home/raid/hweeling/freesurfer//bin/mrisp_paint: Exec format error.
Binary file not executable.
/home/raid/hweeling/freesurfer/subjects/S15_fs
mri_convert /home/raid/hweeling/DICOM/AVE02_S15.MR.MPI_STANDARD_USERS.8.2.2008.04.08.11.29.54.171875.29050922.IMA /home/raid/hweeling/freesurfer/subjects/S15_fs/mri/orig/001.mgz
/home/raid/hweeling/freesurfer//bin/mri_convert: Exec format error.
Binary file not executable.
Linux zeus.AC.kyb.local 2.6.18-53.1.4.el5 #1 SMP Fri Nov 30 00:45:16
EST 2007 i686 i686 i386 GNU/Linux
recon-all exited with ERRORS at Mon Sep 15 16:02:31 CEST 2008
what might have gone wrong?
Cheers,
HweeLing

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