Dear Freesurfers,
I would like to mark the brain surface (fsaverage) for an illustration of stimulation areas (TMS).
I have calculated coordinates in Vertex RAS and Vertex Talairach. They are correctly located on the fsaverage surface in tksurfer.
Is there a way to create labels of equal sizes at those coordinates? Ideally by using a script (since I have to mark them in 50 patients).
this is purely for illustrative purposes. All coordinates are in fasaverage space.
Any help would be appreciated, Bastian
Hi Bastian
you should be able to do this with a tcl script in tksurfer. Take a look at the ones we distribute for some examples
cheers Bruce On Tue, 4 Nov 2014, Bastian Cheng wrote:
Dear Freesurfers,
I would like to mark the brain surface (fsaverage) for an illustration of stimulation areas (TMS).
I have calculated coordinates in Vertex RAS and Vertex Talairach. They are correctly located on the fsaverage surface in tksurfer.
Is there a way to create labels of equal sizes at those coordinates? Ideally by using a script (since I have to mark them in 50 patients).
this is purely for illustrative purposes. All coordinates are in fasaverage space.
Any help would be appreciated, Bastian _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Bruce, thank you!
I looked up all commands here: http://freesurfer.net/fswiki/TkSurferGuide/TkSurferScripting/TkSurferScripti...
I guess what I should do is
1) mark vertex at coordinate 2) create label at marked vertex 3) maybe dilate the label.
does this sound right?
On 4 November 2014 23:24, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Bastian
you should be able to do this with a tcl script in tksurfer. Take a look at the ones we distribute for some examples
cheers Bruce On Tue, 4 Nov 2014, Bastian Cheng wrote:
Dear Freesurfers,
I would like to mark the brain surface (fsaverage) for an illustration of stimulation areas (TMS).
I have calculated coordinates in Vertex RAS and Vertex Talairach. They are correctly located on the fsaverage surface in tksurfer.
Is there a way to create labels of equal sizes at those coordinates? Ideally by using a script (since I have to mark them in 50 patients).
this is purely for illustrative purposes. All coordinates are in fasaverage space.
Any help would be appreciated, Bastian _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
yes, exactly On Tue, 4 Nov 2014, Bastian Cheng wrote:
Hi Bruce, thank you!
I looked up all commands here: http://freesurfer.net/fswiki/TkSurferGuide/TkSurferScripting/TkSurferScripti...
I guess what I should do is
- mark vertex at coordinate
- create label at marked vertex
- maybe dilate the label.
does this sound right?
On 4 November 2014 23:24, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Bastian
you should be able to do this with a tcl script in tksurfer. Take a look at the ones we distribute for some examples
cheers Bruce On Tue, 4 Nov 2014, Bastian Cheng wrote:
Dear Freesurfers,
I would like to mark the brain surface (fsaverage) for an illustration of stimulation areas (TMS).
I have calculated coordinates in Vertex RAS and Vertex Talairach. They are correctly located on the fsaverage surface in tksurfer.
Is there a way to create labels of equal sizes at those coordinates? Ideally by using a script (since I have to mark them in 50 patients).
this is purely for illustrative purposes. All coordinates are in fasaverage space.
Any help would be appreciated, Bastian _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bastian Cheng -
Bruce Fischl