Jorge,

I can't say I've encountered this problem before, so I can only offer some basic suggestions. Which shell are you running from? bash, csh or tcsh?

Can you try creating a tcsh script that does a copy? like these two lines:

#!/bin/tcsh

cp somefile newsomefile

where somefile is the name of some file of yours.

This will at least start with the simplest thing. You can post your response to me if you want.

Nick

Hello all

I have a Dual core Intel Pentium 3.0Gz machine with 2GB RAM and two SATA2 Hard Disks (300 GB and 80GB, respectively). I have successfully installed Linux Centos4 X86-64 (on the 80 GB disk) and the corresponding freesurfer version. I have run several freesurfer commands successfully (eg. tkmedit bert orig.mgz). The problem is when I try to run a complete analysis (recon-all - autorecon-all), the corresponding terminal gets stop undefinedly when it has to execute a copy operation (e.g. cp aseg.auto.mgz aseg.mgz). That is to say the problem get rise when freesurfer sends a copy order to the operating system.

Manually I carry out the copy command and I don't have any problems. But when I reactivate freesurfer (eg. recon-all - autorecon2-cp) the terminal stops again when it has to carry out a copy operation again.

I have another Intel Dual Xeon Dual Core 2.8Gz 5GB RAM machine with Linux Centos 4 X86-64 and the same configuration. No problem is there.

Any tip to overcome this problem is welcome

Thank you in advance Jorge

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