External Email - Use Caution

Yes, it's all sourced correctly. The output after sourcing:

bash:/opt/freesurfer/freesurfer-7.4.1$ source $FREESURFER_HOME/SetUpFreeSurfer.sh -------- freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /opt/freesurfer/freesurfer-7.4.1 FSFAST_HOME /opt/freesurfer/freesurfer-7.4.1/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /opt/freesurfer/freesurfer-7.4.1/subjects MNI_DIR /opt/freesurfer/freesurfer-7.4.1/mni

Is your Freesurfer Environment sourced correctly? Here is the wiki help https://secure-web.cisco.com/1ijMGNvsZHBy0jgsTYEFevQx_e5Y2oKLcFa7pDhxI5jfNgM...

Best,

Yujing

From: freesurfer-boun...@nmr.mgh.harvard.edu freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Gregory Book Sent: Tuesday, April 23, 2024 9:21 AM To: freesurfer freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Problem running recon-all

External Email - Use Caution I recently installed freesurfer 7.4.1 on a Debian 12 system (using the Ubuntu 22 .tar.gz). When running recon-all, I get the following error:

-bash: /opt/freesurfer/freesurfer-7.4.1/bin/recon-all: cannot execute: required file not found

Paths are all set, and all scripts and executables have execute permissions. What might be happening?

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