You'll probably have to do the talairach registration by hand. See the wiki for instructions.

doug

Yuan Xu wrote:

Hello all,

I have trouble to run FreeSurfer for under one year old baby 

subjects, the most frequently problems are two: one is stop to run without exit in mri_fix_topology, and other one is error exit on talairach_afd: Talairach Transform:FAILED

Does someone know how to solve the problem?

Thanks for help,

Yuan

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Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Hi Yuan,

I doubt things will work if the babies are much under 1 as the gray/white contrast will either be inverted or nonexistent. You can turn off the talairach failure detection, but things still may not work

cheers, Bruce

On Mon, 8 Sep 2008, Yuan Xu wrote:

Hello all,

<?xml:namespace prefix = o ns = "urn:schemas-microsoft-com:office:office" />

I have trouble to run FreeSurfer for under one year old baby subjects, the most frequently problems are two: one is stop to run without exit in mri_fix_topology, and other one is error exit on talairach_afd: Talairach Transform:FAILED

Does someone know how to solve the problem?

Thanks for help,

Yuan