Hi all,
I'm trying to use tkmedit to pick electrode points for a patient. For the mri, I'm using the average brain provided by freesurfer. I realized that I have no norm.mgz file which tkmedit calls. How do I create this?
Thanks, Mia
why not just use the orig.mgz that is there?
On 05/30/2014 02:40 PM, Borzello, Mia wrote:
Hi all,
I'm trying to use tkmedit to pick electrode points for a patient. For the mri, I'm using the average brain provided by freesurfer. I realized that I have no norm.mgz file which tkmedit calls. How do I create this?
Thanks, Mia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Right that will work. I will try that. Also in using the average brain am I able to compute the pial layers(lh.pial-outer-smoothed, rh.pial-outer-smoothed)? I tried and it errored- i attached a screenshot of the error.
Thanks a lot, m ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Friday, May 30, 2014 3:34 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] creating norm.mgz
why not just use the orig.mgz that is there?
On 05/30/2014 02:40 PM, Borzello, Mia wrote:
Hi all,
I'm trying to use tkmedit to pick electrode points for a patient. For the mri, I'm using the average brain provided by freesurfer. I realized that I have no norm.mgz file which tkmedit calls. How do I create this?
Thanks, Mia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Or is there a file that corresponds to the outer-smoothed pials? like lh.pial_avg or lh.pial.avg.area.mgh that I can use?
Thanks, m ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Friday, May 30, 2014 3:34 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] creating norm.mgz
why not just use the orig.mgz that is there?
On 05/30/2014 02:40 PM, Borzello, Mia wrote:
Hi all,
I'm trying to use tkmedit to pick electrode points for a patient. For the mri, I'm using the average brain provided by freesurfer. I realized that I have no norm.mgz file which tkmedit calls. How do I create this?
Thanks, Mia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu